FiltRest3D - web server

Filtering protein models by fuzzy restraints

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PDB files to be ranked (all may not exceed 30MB limit.)


Base restraint weight
(default is 1.0)


Clustering threshold
(default is 1.0)
Minimum numbered of top decoys to cluster


Distance restraints
Name of the 1st residue (optional) Number of the 1st residue Atom name in the 1st residue (atom code in PDB file) Chain name of the 1st residue Name of the 2nd residue (optional) Number of the 2nd residue Atom name in the 2nd residue (atom code in PDB file) Chain name of the 2nd residue Distance between atoms Distance [Angstrom] Weight (optional)  


Penalty for violated distance restraints  linear
 quadratic


Secondary structure restraints
alpha-helix
from (residue number) to (residue number) chain name (optional) weight (optional)  
beta-strand
from (residue number) to (residue number) chain name (optional) weight (optional)  
loop
from (residue number) to (residue number) chain name (optional) weight (optional)  


Solvation
relative percentage of residue surface that is accessible for solvent
(0 - residue is completely buried, 100 - residue is on protein surface)
Residue number from (in range of 0-100) to (in range of 0-100) chain name (optional) weight (optional)


Checking for "knots" in models
(optional)
 do not check
 no knots should be present
 at least one knot should be present


Run Sable for checking solvation no
yes


Print unsatisfied restraints no
yes


Result print on web page
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Uploading data to server...

The analysis may take 1-60 seconds per model.

Results or error messages will be sent by email.

Results or error messages will be displayed on the following web page.




Software developed by Marta Kaczor, Anastasia Yu. Bakulina, and Michał J Gajda <mgajda@genesilico.pl>.

Currently maintained by Michał J. Gajda <mgajda@genesilico.pl>